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If you can not use our local 2TB-SSDs (see Special Filesystems) #SBATCH --partition={standard,large,huge}96:ssd at $LOCAL_TMPDIR please refer to our general advices to reduce Metadata Usage on WORK (=Lustre).
To adapt/optimize your OpenFOAM job specifically for I/O operations on $WORK (=Lustre) we strongly recommend the following steps:
Always, to avoid that each processor writes in its own file please use collated file I/O.
This feature was released 2017 for all OpenFOAM versions.
[ESI www.openfoam.com/releases/openfoam-v1712/parallel.php]
[Foundation www.openfoam.org/news/parallel-io]Codeblock OptimisationSwitches { fileHandler collated; // all processors share a file }
to the /.OpenFOAM/v#/controlDict file or per-case override in the $FOAM_CASE/system/controlDict file.
Always, set
Codeblock runTimeModifiable false;
to reduce I/O activity. Only set "true" (default), if it is strictly necessary to re-read dictionaries (controlDict, ...) each time step.
Possibly, do not save every time step:
[www.openfoam.com/documentation/guides/latest/doc/guide-case-system-controldict.html]
[www.cfd.direct/openfoam/user-guide/v6-controldict]Codeblock writeControl timeStep; writeInterval 100;
Possibly, save only the latest n time steps (overwrite older ones), such as:
Codeblock purgeWrite 1000;
Typically, only a subset of variables is needed frequently (post-processing). The full set of variables can be saved less frequently (e.g., restart purposes). This can be achieved with [https://wiki.bwhpc.de/e/OpenFoam]:
Codeblock writeControl clockTime; writeInterval 21600; // write ALL variables every 21600 seconds = 6 h functions { writeFields { type writeObjects; libs ("libutilityFunctionObjects.so"); objects ( T U // specified variables ); outputControl timeStep; writeInterval 100; // write specified variables every 100 steps } }
In case your HLRN run job accidentally generated thousands of small files, please pack them (at least the small-size metadata files) into a single file afterwards:
Codeblock tar -xvzf singlefile.tar.gz -C /folder/subfolder/location/
Thanks a lot for your contribution making HLRN the compute systems a great place for all...
Compiling Own Code Over OpenFOAM
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