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hdf5-modules do not have any effect during the runtime of your binaries. If the hdf5-libraries are linked dynamically, it is recommended to set RPATH in the binary. Otherwise the hdf5-libraries (and others) will not be found, during runtime. This can be done with the compiler option -Wl,-rpath=$LD_RUN_PATH, which passes the rpath to the linker.
hdf5 compiler wrapper
The compiler wrapper h5cc, h5fc (parallel h5pcc and h5pfc) can be used to be written ..build programs linking the hdf5-libraries. These wrappers set rpath for all libraries to be linked dynamically for hdf5.
Installing the hdf5-libraries
Prerequisites
- the szip library
- for parallel builds intel-MPI or openMPI.
- all other ingredients (zlib) are part of the system.
Options
version 1.10.
--with-pic--enable-production--enable-unsupported --enable-threadsafe--enable-fortran --enable-fortran2003 --enable-cxx
version 1.12.
--with-pic--enable-production --enable-optimization=high--enable-direct-vfd --enable-preadwrite--enable-unsupported --enable-threadsafe--enable-fortran --enable-fortran2003 --enable-cxx
Example Script for Installing HDF-5
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