HDF5 is a data model, library, and file format for storing and managing data. It can represent very complex data objects and a wide variety of metadata.
Documentation
For a documentation visit the HDF group
support portal
Installed versions
Serial HDF5
The libraries are threadsafe and can be used in omp-parallel codes.
Parallel hdf5
| Version | Compiler, MPI | Module | API |
| 1.10.5 | intel/18.0.6, impi/2018.5 | hdf5-parallel/impi/intel/1.10.5 | v110 |
| 1.10.6 | intel/18.0.6, impi/2018.5 | hdf5-parallel/impi/intel/1.10.6 | v110 |
1.10.6 | intel, openmpi/intel/3.1.6 | hdf5-parallel/ompi/intel/1.10.6 | v110 |
1.10.5 | gcc/8.3.0, openmpi/gcc.9/3.1.5 | hdf5-parallel/ompi/gcc.8/1.10.6 | v110 |
1.10.5 | gcc/9.2.0, openmpi/gcc.9/3.1.5 | hdf5-parallel/ompi/gcc.8/1.10.6 | v110 |
| 1.12.0 | gcc/8.3.0, openmpi/gcc.9/3.1.5 | hdf5-parallel/ompi/gcc.8/1.12.0 | v112 |
The libraries are threadsafe and can be used in omp-parallel codes.
Modules
Example Jobscripts
#!/bin/bash #SBATCH -p module load