HLRN provides tailored WORK file systems for improved IO throughput of IO intense job workloads.
Default Lustre (WORK)
WORK is the default shared file system for all jobs and can be accessed using the $WORK variable. WORK is accessible for all users and consists of 8 Metadata Targets (MDT's) with NVMe SSDs and 28 Object Storage Targets (OST's) on Lise and 100 OST's on Emmy handling the data. Both using classical hard drives.
Access: $WORK
Size: 8 PiB quoted
Special File System Types
Lustre with striping (WORK)
Some workloads will benefit of striping. Files will be split between a number of OSTs.
Especially large shared file IO patterns will benefit from striping. Up to 28 OSTs on Lise and up to 100 OST's on Emmy can be used, recommeded are up to 8 OSTs for Lise and 32 OSTs on Emmy.
Access: create a new directory in $WORK and set lfs setstripe -c <stripsize> <dir>
Size: 8 PiB like WORK
Local SSDs
Some Compute Nodes are installed with local SSD storage up to 2 TB on Lise and 400 GB on Emmy.
Data on local SSDs can not be shared across nodes and will be deleted after the job is finished.
For unshared local IO this is the best performing file system to use.
| Lise: SSD | Lise: CAS | Emmy: SSD | |
|---|---|---|---|
| Access | via queue: using | via queue: using | via queue: using |
| Type and size | Intel NVMe SSD DC P4511 (2 TB) | Intel NVMe SSD DC P4511 (2 TB) using Intel Optane SSD DC P4801X (200 GB) as write-trough cache | Intel DC S4500 (400 GB) |
FastIO - Lise only
WORK is extended with 4 additional OST's using NVMe SSDs to accelerate heavy IO-demands. To accelerate specific IO-demands further striping for up to 4 OSTs is available.
Access: ask support@hlrn.de for access
Size: 55 TiB - quoted
IME - Emmy only
DDN Infinite Memory Engine (IME) based Burst Buffers is a fast NVMe Solid State Disk (SSD) based data tier. Like Lise's FastIO this is especially helpful for random IO (especially random read) on large files.
Using the Burst Buffer for random IO helps to avoid overloading the global filesystem which results in slow job runtimes for all users. Beside the POSIX interface a native API and a MPI-IO module for further acceleration is available.
IME servers are currently available for use in EMMY.
Access: ask support@hlrn.de for access
Size: 48 TiB
Finding the right File System
If your jobs have a significant IO part we recommend asking your consultant via support@hlrn.de to recommend the right file system for you.
Local IO
If you have a significant amount of node-local IO which is not needed to be accessed after job end and will be smaller than 2 TB on Lise and 400 GB on Emmy we recommend using $LOCAL_TMPDIR. Depending on your IO pattern this may accelerate IO to up to 100%.
Global IO
Global IO is defined as shared IO which will be able to be accessed from multiple nodes at the same time and will be persistent after job end.
Especially random IO on small files will be accelerated up to 200% using FastIO on Lise or IME on Emmy
INTERNAL - not public - will be deleted
Recommendation Matrix:
Max performance gain on IO versus default $WORK in brackets.
| small random IO | lots of large IO per process | few large IO accessed from many nodes | unknown IO | |||||
|---|---|---|---|---|---|---|---|---|
| local IO | global IO | local IO | global IO | local IO | global IO | local IO | global IO | |
| Code e.g. | OpenFOAM? | FESOM? | ||||||
| write IO | Local SSDs (+100%) | FastIO stripe=4 (+30%) | Local SSDs (+15%) | $WORK | $WORK | FastIO stripe=4 (+200%) or $WORK stripe=4-8 (+200%) | Local SSDs (+40%) | FastIO stripe=4 (+80%) $WORK stripe=4-8 (+70%) |
| read IO | Local SSDs (+30%) | FastIO (+140%) | Local SSDs (+30%) | FastIO stripe=4 (+20%) | Local SSDs (+35%) | FastIO stripe=4 (+200%) | Local SSDs (+30%) | FastIO stripe=4 (+120%) $WORK stripe=MAX (+90%) |
| balanced IO | Local SSDs (+60%) | FastIO stripe=4 (+90%) | Local SSDs (+25%) | FastIO (+15%) | Local SSDs (+20%) | FastIO stripe=4 (+200%) or $WORK stripe=MAX (+150%) | Local SSDs (+35%) | FastIO stripe=4 (+100%) FastIO (+50%) |
Commands
Striping einrichten
mkdir <dirname>
lfs setstripe -c <count> <dirname>
DoM einrichten
mkdir <dirname>
lfs setstripe -E 64K -L mdt -E -1 -p work.rotational <dirname>
FastIO einrichten
mkdir <dirname>
lfs setstripe -p flash <dirname>
Fastio mit Striping 4 einrichten:
mkdir <dirname>
lfs setstripe -p flash -c 4 <dirname>
Prüfen
lfs getstripe <dirname>
Vorschlag Ankündigung
Subj: additional WORK file systems available
Dear HLRN Users.
To achieve improved IO performance HLRN has installed additional file systems tailored for dedicated IO demands.
LISE has now node-local SSDs using NVMe and Optane to accelerate local IO. Furthermore we have installed a SSD based Lustre called 'FastIO'.
EMMY is upgraded with an IME.....
If your jobs have a significant amount of IO which can be accelerated visit: 13730697 or contact our support.
Kind Regards
HLRN-Team